PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0062s0101.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 489aa    MW: 52425.7 Da    PI: 7.2567
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0062s0101.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-06153175225
                           -S---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                           k ++C+f+++ G C++G+ C + H
  Sphfalx0062s0101.2.p 153 KGKPCNFWLK-GNCNRGEDCMYLH 175
                           5689******.*********9999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.49E-73459IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.153461IPR000571Zinc finger, CCCH-type
SMARTSM003560.00743660IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-53858IPR000571Zinc finger, CCCH-type
PfamPF146080.0293959No hitNo description
Gene3DG3DSA:4.10.1000.107.8E-5149176IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-5151177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859151178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6153176IPR000571Zinc finger, CCCH-type
PfamPF146080.017156175No hitNo description
SMARTSM003200.0019182221IPR001680WD40 repeat
SuperFamilySSF509783.91E-49184479IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.9E-9186258IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004000.033188221IPR001680WD40 repeat
PROSITE profilePS5029423.335189392IPR017986WD40-repeat-containing domain
PROSITE profilePS5008212.346189230IPR001680WD40 repeat
PROSITE patternPS006780208222IPR019775WD40 repeat, conserved site
PRINTSPR003208.0E-7208222IPR020472G-protein beta WD-40 repeat
Gene3DG3DSA:2.130.10.106.2E-39259478IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0038261299IPR001680WD40 repeat
PfamPF004000.16265298IPR001680WD40 repeat
SMARTSM003202.5E-5306343IPR001680WD40 repeat
PfamPF004000.0022310343IPR001680WD40 repeat
PROSITE profilePS5008214.017313352IPR001680WD40 repeat
PROSITE patternPS006780330344IPR019775WD40 repeat, conserved site
PRINTSPR003208.0E-7330344IPR020472G-protein beta WD-40 repeat
SMARTSM003201.3E-5346383IPR001680WD40 repeat
PfamPF004005.9E-5347382IPR001680WD40 repeat
PROSITE profilePS500829.339353392IPR001680WD40 repeat
PRINTSPR003208.0E-7370384IPR020472G-protein beta WD-40 repeat
SMARTSM00320160387437IPR001680WD40 repeat
SMARTSM003202.5440477IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MVAGMDVDDG PARVHRKRHT RPVTTGGGRT VGKDHNPQIC RYWQEGRCLK GEDCQWLHPG  60
SVGTTGRVAS LGNNGRRTTS NLIDSNRSSN RAGWGSVGGG GGGGFSTGNN QGRPRNVSAS  120
WGRPRNVSSR PGQRDRVYSE GGGGDGAPHR GTKGKPCNFW LKGNCNRGED CMYLHAHTTA  180
LDVEMMTQLI GHEKAIRAIE MPQGASQLYT CSQDESVRVW DCTTGQCASV VQMGGDVSAL  240
LSAPGWLFIG LPDEVQTWNM QTSAQQSLSG PKGQVHALAV SEDGLLFAGT QDGTILEWKF  300
NPITNFFEPA ASLSGHSGPV ITLLFIGNRL YSGSTDKSIR IWDIGSGQCL QTLEGHSDVV  360
MDLLCWEQFL LSCSLDGTIR VWAVNAAGQL DTTFTHPEDE GQAEPRNGAL KMCGCNDGAG  420
KPVLLVSYND NIVRLYDLPM FSERGQLFSR EEVRALQVGP GGLLFSGDSR GTVKVWRWTG  480
VQLAAGGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1p22_A2e-14183387163410F-box/WD-repeat protein 1A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001783701.11e-178predicted protein, partial
TrEMBLA9TYM91e-178A9TYM9_PHYPA; Predicted protein (Fragment)
STRINGPP1S374_36V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-131C3H family protein